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Hello Sean,
 Q. -  I stained with island sand applied using a  garden sprayer in a circular motion.  Surface was scrubbed with TSP and  rinsed thoroughly before applying.  There are noticeable redder marks in  some areas.  I think the overall look is good still, but is there a reason  for this?
Hello Sean,
A. - The stain works by chemically  reacting with the lime, cement, and minerals in the concrete, to change the  pores and surface of the concrete to the new and permanent color. When your  concrete was originally poured into place, that lime and cement and all the  other components were randomly dispersed throughout. 
    The stain is simply reacting with what is  there and where it is. Of course you can highlight with other colors if you  like, but if you're happy with it you may want to just leave it alone.  
    Another consideration is that if you  seal it, then that will change the color's appearance as well. The solvent base  sealer will make it look as it does when saturated wet with water, and the water  base sealer will make it look as it does when it is damp with  water.